Thursday, 28 June 2012

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Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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PubMed Results
Item 1 of 1

1. Lancet. 2012 May 26;379(9830):1938.

Profile: Children of the 90s comes of age.

Frood A.
PMID: 22645741 [PubMed - indexed for MEDLINE]

Wednesday, 27 June 2012

What's new for 'JKB_daily1' in PubMed

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Sender's message: Sepsis or genomics or altitude: JKB_daily1

Sent on Wednesday, 2012 June 27
Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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PubMed Results
Items 1 - 5 of 5

1. N Engl J Med. 2012 Jun 21;366(25):2409-19.

Case records of the Massachusetts General Hospital. Case 19-2012. A premature newborn boy with respiratory distress.

Catlin EA, Warren HS, Shailam R, Lahoud-Rahme M, Lew M.

Source

Department of Pediatrics, Massachusetts General Hospital, Boston, USA.

PMID: 22716980 [PubMed - indexed for MEDLINE]
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2. Science. 2012 Jun 8;336(6086):1246-7. Epub 2012 Jun 6.

Taking stock of the human microbiome and disease.

Balter M.
PMID: 22674333 [PubMed - indexed for MEDLINE]
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3. Science. 2012 Jun 8;336(6086):1209. Epub 2012 Jun 6.

Tackling the microbiome.

Hood L. Free Article
PMID: 22674329 [PubMed - indexed for MEDLINE]
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4. Science. 2012 Jun 8;336(6086):1251-3. Epub 2012 Jun 6.

Honor thy gut symbionts redux.

Gordon JI.

Source

Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63108, USA. jgordon@wustl.edu

Abstract

Exploring our gut microbial communities with new tools is allowing us to revisit old questions; to develop new concepts about our evolution, postnatal development, systems physiology, individuality, and definitions of health; and to further delineate the impact of our changing life-styles. It is also allowing us to envision exciting new ways for addressing global health problems. This area is inherently interdisciplinary, offering a wealth of opportunities to create new fields, partnerships, and educational initiatives. It is captivating to the public and carries substantial expectations. As such, participating scientists need to sponsor proactive, solution-focused discussions of its societal implications.

PMID: 22674326 [PubMed - indexed for MEDLINE]
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5. Science. 2012 Jun 8;336(6086):1253-5. Epub 2012 Jun 6.

Is it time for a metagenomic basis of therapeutics?

Haiser HJ, Turnbaugh PJ.

Source

Faculty of Arts and Sciences Center for Systems Biology, Harvard University, Cambridge, MA, USA.

Abstract

The trillions of microbes associated with the human body are a key part of a comprehensive view of pharmacology. A mechanistic understanding of how the gut microbiota directly and indirectly affects drug metabolism is beginning to emerge.

PMID: 22674325 [PubMed - indexed for MEDLINE]
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Tuesday, 26 June 2012

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Sent on Tuesday, 2012 June 26
Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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PubMed Results
Items 1 - 2 of 2

1. Nature. 2012 May 9;485(7397):148. doi: 10.1038/485148a.

Price of freedom.

[No authors listed]
PMID: 22575921 [PubMed - indexed for MEDLINE]
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2. Nature. 2012 Apr 8;485(7397):264-8. doi: 10.1038/nature11013.

Systematic discovery of structural elements governing stability of mammalian messenger RNAs.

Goodarzi H, Najafabadi HS, Oikonomou P, Greco TM, Fish L, Salavati R, Cristea IM, Tavazoie S.

Source

Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA.

Abstract

Decoding post-transcriptional regulatory programs in RNA is a critical step towards the larger goal of developing predictive dynamical models of cellular behaviour. Despite recent efforts, the vast landscape of RNA regulatory elements remains largely uncharacterized. A long-standing obstacle is the contribution of local RNA secondary structure to the definition of interaction partners in a variety of regulatory contexts, including--but not limited to--transcript stability, alternative splicing and localization. There are many documented instances where the presence of a structural regulatory element dictates alternative splicing patterns (for example, human cardiac troponin T) or affects other aspects of RNA biology. Thus, a full characterization of post-transcriptional regulatory programs requires capturing information provided by both local secondary structures and the underlying sequence. Here we present a computational framework based on context-free grammars and mutual information that systematically explores the immense space of small structural elements and reveals motifs that are significantly informative of genome-wide measurements of RNA behaviour. By applying this framework to genome-wide human mRNA stability data, we reveal eight highly significant elements with substantial structural information, for the strongest of which we show a major role in global mRNA regulation. Through biochemistry, mass spectrometry and in vivo binding studies, we identified human HNRPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1, also known as HNRNPA2B1) as the key regulator that binds this element and stabilizes a large number of its target genes. We created a global post-transcriptional regulatory map based on the identity of the discovered linear and structural cis-regulatory elements, their regulatory interactions and their target pathways. This approach could also be used to reveal the structural elements that modulate other aspects of RNA behaviour.

PMCID: PMC3350620 [Available on 2012/10/8]
PMID: 22495308 [PubMed - indexed for MEDLINE]
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Friday, 22 June 2012

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Sender's message: Sepsis or genomics or altitude: JKB_daily1

Sent on Friday, 2012 June 22
Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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PubMed Results
Item 1 of 1

1. N Engl J Med. 2012 Jun 14;366(24):2267-75.

Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak.

Köser CU, Holden MT, Ellington MJ, Cartwright EJ, Brown NM, Ogilvy-Stuart AL, Hsu LY, Chewapreecha C, Croucher NJ, Harris SR, Sanders M, Enright MC, Dougan G, Bentley SD, Parkhill J, Fraser LJ, Betley JR, Schulz-Trieglaff OB, Smith GP, Peacock SJ.

Source

University of Cambridge, Cambridge, United Kingdom.

Abstract

BACKGROUND:

Isolates of methicillin-resistant Staphylococcus aureus (MRSA) belonging to a single lineage are often indistinguishable by means of current typing techniques. Whole-genome sequencing may provide improved resolution to define transmission pathways and characterize outbreaks.

METHODS:

We investigated a putative MRSA outbreak in a neonatal intensive care unit. By using rapid high-throughput sequencing technology with a clinically relevant turnaround time, we retrospectively sequenced the DNA from seven isolates associated with the outbreak and another seven MRSA isolates associated with carriage of MRSA or bacteremia in the same hospital.

RESULTS:

We constructed a phylogenetic tree by comparing single-nucleotide polymorphisms (SNPs) in the core genome to a reference genome (an epidemic MRSA clone, EMRSA-15 [sequence type 22]). This revealed a distinct cluster of outbreak isolates and clear separation between these and the nonoutbreak isolates. A previously missed transmission event was detected between two patients with bacteremia who were not part of the outbreak. We created an artificial "resistome" of antibiotic-resistance genes and demonstrated concordance between it and the results of phenotypic susceptibility testing; we also created a "toxome" consisting of toxin genes. One outbreak isolate had a hypermutator phenotype with a higher number of SNPs than the other outbreak isolates, highlighting the difficulty of imposing a simple threshold for the number of SNPs between isolates to decide whether they are part of a recent transmission chain.

CONCLUSIONS:

Whole-genome sequencing can provide clinically relevant data within a time frame that can influence patient care. The need for automated data interpretation and the provision of clinically meaningful reports represent hurdles to clinical implementation. (Funded by the U.K. Clinical Research Collaboration Translational Infection Research Initiative and others.).

PMID: 22693998 [PubMed - indexed for MEDLINE]
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Wednesday, 20 June 2012

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Sender's message: Sepsis or genomics or altitude: JKB_daily1

Sent on Wednesday, 2012 June 20
Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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PubMed Results
Items 1 - 2 of 2

1. Nature. 2012 May 2;485(7396):47-8. doi: 10.1038/485047a.

Translational medicine: Double protection for weakened bones.

Zaidi M, Iqbal J.

Comment on

  • Osteoprotection by semaphorin 3A. [Nature. 2012]
PMID: 22552091 [PubMed - indexed for MEDLINE]
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2. Nature. 2012 May 3;485(7396):69-74.

Osteoprotection by semaphorin 3A.

Hayashi M, Nakashima T, Taniguchi M, Kodama T, Kumanogoh A, Takayanagi H.

Source

Department of Cell Signaling, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Yushima 1-5-45, Bunkyo-ku, Tokyo 113-8549, Japan.

Comment in

Abstract

The bony skeleton is maintained by local factors that regulate bone-forming osteoblasts and bone-resorbing osteoclasts, in addition to hormonal activity. Osteoprotegerin protects bone by inhibiting osteoclastic bone resorption, but no factor has yet been identified as a local determinant of bone mass that regulates both osteoclasts and osteoblasts. Here we show that semaphorin 3A (Sema3A) exerts an osteoprotective effect by both suppressing osteoclastic bone resorption and increasing osteoblastic bone formation. The binding of Sema3A to neuropilin-1 (Nrp1) inhibited receptor activator of nuclear factor-κB ligand (RANKL)-induced osteoclast differentiation by inhibiting the immunoreceptor tyrosine-based activation motif (ITAM) and RhoA signalling pathways. In addition, Sema3A and Nrp1 binding stimulated osteoblast and inhibited adipocyte differentiation through the canonical Wnt/β-catenin signalling pathway. The osteopenic phenotype in Sema3a−/− mice was recapitulated by mice in which the Sema3A-binding site of Nrp1 had been genetically disrupted. Intravenous Sema3A administration in mice increased bone volume and expedited bone regeneration. Thus, Sema3A is a promising new therapeutic agent in bone and joint diseases.

PMID: 22522930 [PubMed - indexed for MEDLINE]
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Tuesday, 19 June 2012

What's new for 'JKB_daily1' in PubMed

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Sender's message: Sepsis or genomics or altitude: JKB_daily1

Sent on Tuesday, 2012 June 19
Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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PubMed Results
Items 1 - 6 of 6

1. Nature. 2012 Apr 25;484(7395):524-8. doi: 10.1038/nature11042.

Infection regulates pro-resolving mediators that lower antibiotic requirements.

Chiang N, Fredman G, Bäckhed F, Oh SF, Vickery T, Schmidt BA, Serhan CN.

Source

Center for Experimental Therapeutics and Reperfusion Injury, Department of Anesthesiology, Perioperative and Pain Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA.

Abstract

Underlying mechanisms for how bacterial infections contribute to active resolution of acute inflammation are unknown. Here, we performed exudate leukocyte trafficking and mediator-metabololipidomics of murine peritoneal Escherichia coli infections with temporal identification of pro-inflammatory (prostaglandins and leukotrienes) and specialized pro-resolving mediators (SPMs). In self-resolving E. coli exudates (10(5) colony forming units, c.f.u.), the dominant SPMs identified were resolvin (Rv) D5 and protectin D1 (PD1), which at 12 h were at significantly greater levels than in exudates from higher titre E. coli (10(7) c.f.u.)-challenged mice. Germ-free mice had endogenous RvD1 and PD1 levels higher than in conventional mice. RvD1 and RvD5 (nanograms per mouse) each reduced bacterial titres in blood and exudates, E. coli-induced hypothermia and increased survival, demonstrating the first actions of RvD5. With human polymorphonuclear neutrophils and macrophages, RvD1, RvD5 and PD1 each directly enhanced phagocytosis of E. coli, and RvD5 counter-regulated a panel of pro-inflammatory genes, including NF-κB and TNF-α. RvD5 activated the RvD1 receptor, GPR32, to enhance phagocytosis. With self-limited E. coli infections, RvD1 and the antibiotic ciprofloxacin accelerated resolution, each shortening resolution intervals (R(i)). Host-directed RvD1 actions enhanced ciprofloxacin's therapeutic actions. In 10(7) c.f.u. E. coli infections, SPMs (RvD1, RvD5, PD1) together with ciprofloxacin also heightened host antimicrobial responses. In skin infections, SPMs enhanced vancomycin clearance of Staphylococcus aureus. These results demonstrate that specific SPMs are temporally and differentially regulated during infections and that they are anti-phlogistic, enhance containment and lower antibiotic requirements for bacterial clearance.

PMCID: PMC3340015 [Available on 2012/10/26]
PMID: 22538616 [PubMed - indexed for MEDLINE]
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2. Nature. 2012 Apr 25;484(7395):455. doi: 10.1038/484455d.

Biobanks: Validate gene findings before telling donors.

Hansson MG.

Comment on

  • Incidental benefits. [Nature. 2012]
  • DNA donor rights affirmed. [Nature. 2012]
PMID: 22538599 [PubMed - indexed for MEDLINE]
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3. Nature. 2012 Apr 25;484(7395):455. doi: 10.1038/484455b.

Molecular biology: Protect the DNA of museum specimens.

Shepherd L, Perrie L.
PMID: 22538597 [PubMed - indexed for MEDLINE]
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4. Nat Med. 2012 Mar 6;18(3):363-74. doi: 10.1038/nm.2627.

The cellular and signaling networks linking the immune system and metabolism in disease.

Osborn O, Olefsky JM.

Source

Department of Medicine, Division of Endocrinology and Metabolism, University of California-San Diego, La Jolla, California, USA.

Abstract

It is now recognized that obesity is driving the type 2 diabetes epidemic in Western countries. Obesity-associated chronic tissue inflammation is a key contributing factor to type 2 diabetes and cardiovascular disease, and a number of studies have clearly demonstrated that the immune system and metabolism are highly integrated. Recent advances in deciphering the various cellular and signaling networks that participate in linking the immune and metabolic systems together have contributed to understanding of the pathogenesis of metabolic diseases and may also inform new therapeutic strategies based on immunomodulation. Here we discuss how these various networks underlie the etiology of the inflammatory component of insulin resistance, with a particular focus on the central roles of macrophages in adipose tissue and liver.

PMID: 22395709 [PubMed - indexed for MEDLINE]
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5. Nat Med. 2012 Mar 6;18(3):326. doi: 10.1038/nm0312-326.

Genomics contest underscores challenges of personalized medicine.

Scudellari M.
PMID: 22395677 [PubMed - indexed for MEDLINE]
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6. Nat Med. 2012 Feb 19;18(3):405-12. doi: 10.1038/nm.2653.

Wnt5a-Ror2 signaling between osteoblast-lineage cells and osteoclast precursors enhances osteoclastogenesis.

Maeda K, Kobayashi Y, Udagawa N, Uehara S, Ishihara A, Mizoguchi T, Kikuchi Y, Takada I, Kato S, Kani S, Nishita M, Marumo K, Martin TJ, Minami Y, Takahashi N.

Source

Institute for Oral Science, Matsumoto Dental University, Nagano, Japan.

Comment in

Abstract

The signaling molecule Wnt regulates bone homeostasis through β-catenin-dependent canonical and β-catenin-independent noncanonical pathways. Impairment of canonical Wnt signaling causes bone loss in arthritis and osteoporosis; however, it is unclear how noncanonical Wnt signaling regulates bone resorption. Wnt5a activates noncanonical Wnt signaling through receptor tyrosine kinase-like orphan receptor (Ror) proteins. We showed that Wnt5a-Ror2 signaling between osteoblast-lineage cells and osteoclast precursors enhanced osteoclastogenesis. Osteoblast-lineage cells expressed Wnt5a, whereas osteoclast precursors expressed Ror2. Mice deficient in either Wnt5a or Ror2, and those with either osteoclast precursor-specific Ror2 deficiency or osteoblast-lineage cell-specific Wnt5a deficiency showed impaired osteoclastogenesis. Wnt5a-Ror2 signals enhanced receptor activator of nuclear factor-κB (RANK) expression in osteoclast precursors by activating JNK and recruiting c-Jun on the promoter of the gene encoding RANK, thereby enhancing RANK ligand (RANKL)-induced osteoclastogenesis. A soluble form of Ror2 acted as a decoy receptor of Wnt5a and abrogated bone destruction in mouse arthritis models. Our results suggest that the Wnt5a-Ror2 pathway is crucial for osteoclastogenesis in physiological and pathological environments and represents a therapeutic target for bone diseases, including arthritis.

PMID: 22344299 [PubMed - indexed for MEDLINE]
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Sunday, 10 June 2012

What's new for 'JKB_daily1' in PubMed

This message contains My NCBI what's new results from the National Center for Biotechnology Information (NCBI) at the U.S. National Library of Medicine (NLM).
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Sender's message: Sepsis or genomics or altitude: JKB_daily1

Sent on Sunday, 2012 June 10
Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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PubMed Results
Items 1 - 3 of 3

1. Lancet. 2012 May 19;379(9829):1853-4.

Genomics and world health: a decade on.

Pang T, Weatherall D.

Source

Lee Kuan Yew School of Public Policy, National University of Singapore, Singapore 259772, Singapore. spptep@nus.edu.sg

PMID: 22608321 [PubMed - indexed for MEDLINE]
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2. Nature. 2012 Apr 12;484(7393):S3.

Genomics: A complex code.

Hughes V.
PMID: 22509504 [PubMed - indexed for MEDLINE]
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3. Nature. 2012 Apr 11;484(7393):271-5. doi: 10.1038/484271a.

Proteomics: The interaction map.

Baker M.
PMID: 22498631 [PubMed - indexed for MEDLINE]
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Friday, 8 June 2012

What's new for 'JKB_daily1' in PubMed

This message contains My NCBI what's new results from the National Center for Biotechnology Information (NCBI) at the U.S. National Library of Medicine (NLM).
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Sender's message: Sepsis or genomics or altitude: JKB_daily1

Sent on Friday, 2012 June 08
Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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PubMed Results
Items 1 - 6 of 6

1. Nat Med. 2012 Apr 5;18(4):497-9. doi: 10.1038/nm.2719.

Neighborhood watch orchestrates liver regeneration.

Diehl AM.
PMID: 22481408 [PubMed - indexed for MEDLINE]
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2. Nat Med. 2012 Apr 5;18(4):491-2. doi: 10.1038/nm.2718.

Vitamin E: good for the heart, bad for the bones?

Roodman GD.
PMID: 22481404 [PubMed - indexed for MEDLINE]
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3. Nat Med. 2012 Apr 5;18(4):485. doi: 10.1038/nm0412-485.

Cockamamie state laws threaten genetic rights.

Wagner J.

Source

University of Pennsylvania, Center for the Integration of Genetic Healthcare Technologies in Philadelphia, Pennsylvania, USA.

PMID: 22481400 [PubMed - indexed for MEDLINE]
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4. Nat Med. 2012 Mar 25;18(4):595-9. doi: 10.1038/nm.2710.

Genetically determined P2X7 receptor pore formation regulates variability in chronic pain sensitivity.

Sorge RE, Trang T, Dorfman R, Smith SB, Beggs S, Ritchie J, Austin JS, Zaykin DV, Vander Meulen H, Costigan M, Herbert TA, Yarkoni-Abitbul M, Tichauer D, Livneh J, Gershon E, Zheng M, Tan K, John SL, Slade GD, Jordan J, Woolf CJ, Peltz G, Maixner W, Diatchenko L, Seltzer Z, Salter MW, Mogil JS.

Source

Department of Psychology and Alan Edwards Centre for Research on Pain, McGill University, Montreal, Quebec, Canada.

Abstract

Chronic pain is highly variable between individuals, as is the response to analgesics. Although much of the variability in chronic pain and analgesic response is heritable, an understanding of the genetic determinants underlying this variability is rudimentary. Here we show that variation within the coding sequence of the gene encoding the P2X7 receptor (P2X7R) affects chronic pain sensitivity in both mice and humans. P2X7Rs, which are members of the family of ionotropic ATP-gated receptors, have two distinct modes of function: they can function through their intrinsic cationic channel or by forming nonselective pores that are permeable to molecules with a mass of up to 900 Da. Using genome-wide linkage analyses, we discovered an association between nerve-injury-induced pain behavior (mechanical allodynia) and the P451L mutation of the mouse P2rx7 gene, such that mice in which P2X7Rs have impaired pore formation as a result of this mutation showed less allodynia than mice with the pore-forming P2rx7 allele. Administration of a peptide corresponding to the P2X7R C-terminal domain, which blocked pore formation but not cation channel activity, selectively reduced nerve injury and inflammatory allodynia only in mice with the pore-forming P2rx7 allele. Moreover, in two independent human chronic pain cohorts, a cohort with pain after mastectomy and a cohort with osteoarthritis, we observed a genetic association between lower pain intensity and the hypofunctional His270 (rs7958311) allele of P2RX7. Our findings suggest that selectively targeting P2X7R pore formation may be a new strategy for individualizing the treatment of chronic pain.

PMCID: PMC3350463 [Available on 2013/3/25]
PMID: 22447075 [PubMed - indexed for MEDLINE]
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5. Nat Med. 2012 Mar 4;18(4):589-94. doi: 10.1038/nm.2659.

Vitamin E decreases bone mass by stimulating osteoclast fusion.

Fujita K, Iwasaki M, Ochi H, Fukuda T, Ma C, Miyamoto T, Takitani K, Negishi-Koga T, Sunamura S, Kodama T, Takayanagi H, Tamai H, Kato S, Arai H, Shinomiya K, Itoh H, Okawa A, Takeda S.

Source

Department of Orthopedic Surgery, Tokyo Medical and Dental University, Tokyo, Japan.

Abstract

Bone homeostasis is maintained by the balance between osteoblastic bone formation and osteoclastic bone resorption. Osteoclasts are multinucleated cells that are formed by mononuclear preosteoclast fusion. Fat-soluble vitamins such as vitamin D are pivotal in maintaining skeletal integrity. However, the role of vitamin E in bone remodeling is unknown. Here, we show that mice deficient in α-tocopherol transfer protein (Ttpa(-/-) mice), a mouse model of genetic vitamin E deficiency, have high bone mass as a result of a decrease in bone resorption. Cell-based assays indicated that α-tocopherol stimulated osteoclast fusion, independent of its antioxidant capacity, by inducing the expression of dendritic-cell-specific transmembrane protein, an essential molecule for osteoclast fusion, through activation of mitogen-activated protein kinase 14 (p38) and microphthalmia-associated transcription factor, as well as its direct recruitment to the Tm7sf4 (a gene encoding DC-STAMP) promoter. Indeed, the bone abnormality seen in Ttpa(-/-) mice was rescued by a Tm7sf4 transgene. Moreover, wild-type mice or rats fed an α-tocopherol-supplemented diet, which contains a comparable amount of α-tocopherol to supplements consumed by many people, lost bone mass. These results show that serum vitamin E is a determinant of bone mass through its regulation of osteoclast fusion.

PMID: 22388090 [PubMed - indexed for MEDLINE]
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6. Nat Med. 2012 Mar 4;18(4):572-9. doi: 10.1038/nm.2667.

Macrophage-derived Wnt opposes Notch signaling to specify hepatic progenitor cell fate in chronic liver disease.

Boulter L, Govaere O, Bird TG, Radulescu S, Ramachandran P, Pellicoro A, Ridgway RA, Seo SS, Spee B, Van Rooijen N, Sansom OJ, Iredale JP, Lowell S, Roskams T, Forbes SJ.

Source

Medical Research Council Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, UK.

Abstract

During chronic injury a population of bipotent hepatic progenitor cells (HPCs) become activated to regenerate both cholangiocytes and hepatocytes. Here we show in human diseased liver and mouse models of the ductular reaction that Notch and Wnt signaling direct specification of HPCs via their interactions with activated myofibroblasts or macrophages. In particular, we found that during biliary regeneration, expression of Jagged 1 (a Notch ligand) by myofibroblasts promoted Notch signaling in HPCs and thus their biliary specification to cholangiocytes. Alternatively, during hepatocyte regeneration, macrophage engulfment of hepatocyte debris induced Wnt3a expression. This resulted in canonical Wnt signaling in nearby HPCs, thus maintaining expression of Numb (a cell fate determinant) within these cells and the promotion of their specification to hepatocytes. By these two pathways adult parenchymal regeneration during chronic liver injury is promoted.

PMCID: PMC3364717 [Available on 2012/10/1]
PMID: 22388089 [PubMed - indexed for MEDLINE]
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Wednesday, 6 June 2012

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Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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1. N Engl J Med. 2012 May 31;366(22):2055-64. Epub 2012 May 22.

Drotrecogin alfa (activated) in adults with septic shock.

Ranieri VM, Thompson BT, Barie PS, Dhainaut JF, Douglas IS, Finfer S, Gårdlund B, Marshall JC, Rhodes A, Artigas A, Payen D, Tenhunen J, Al-Khalidi HR, Thompson V, Janes J, Macias WL, Vangerow B, Williams MD; PROWESS-SHOCK Study Group.

Collaborators: Ranieri V, Thompson B, Barie PS, Dhainaut JF, Douglas IS, Finfer S, Gårdlund B, Marshall JC, Rhodes A, Janes J, Macias WL, Vangerow B, Williams MD, Slutsky AS, Guyatt G, Angus D, Evans T, Carroll R, Weijer C, Boots R, Ernest D, Harrigan P, Chapman M, Bellomo R, Finfer S, Wright C, Crozier T, Davies A, French C, Orford N, Leditschke A, Reade M, MacIsaac C, Dugernier T, Jorens P, Vander Laenen M, Malbrain M, Meersseman W, Stockman W, Damas F, Raemaekers J, Dive AM, Damas P, Rogiers P, Laterre PF, Lobo SM, Auler JO Jr, Carvalho CM, Caldeira M, Dias FS, de Carvalho FB, Machado F, Aslanian P, Guimond JG, Ferguson N, Zuege D, Zuege D, Chittock D, Dhingra V, Chittock D, Rico P, Kumar A, Paunovic B, Fowler R, Lesur O, Anderson W, Sne N, Light R, Sramek V, Neiser J, Pachl J, Sevcik P, Burget I, Cerny V, Parizkova R, Kasal E, Balik M, Dlouhy P, Tenhunen J, Kurola J, Parviainen I, Laru-Sompa R, Loisa P, Kuitunen A, Pettila V, Kaukonen M, Saarinen K, Santré C, Hilbert G, Azoulay E, Mentec H, Levy B, Villers D, Bernardin G, Payen D, Diehl JL, Montravers P, Duranteau J, Cohen Y, Malledant Y, LePape A, Zéni F, Lefrant JY, Quenot JP, Durand-Gasselin J, Guiot P, Ferrandiere M, Le Tulzo Y, Lu Q, Jaber S, Gatécel C, Asehnoune K, de Jonghe B, Ricome JL, Asfar P, Francois B, Desachy A, Mercier E, Martin-Lefèvre L, Robert R, Allaouchiche B, Gerlach H, Motsch J, Jaschinski U, Kuhlen R, Kubitza S, Kluge S, Barth J, Marx G, Hartl W, Weiler N, Jog S, Gadkari M, Gupta R, Chopra VK, Varma A, Oomman A, Reddy R, Singh O, Thacker H, Ramesh MK, Tulli G, Fumagalli R, Gagliardi G, Ranieri M, Urbino R, Minoja G, Panascia B, Castiglione G, Salaris D, Antonelli M, Della Corte F, Poblano Morales MN, Aguirre Sanchez JS, Aguilera Almazán FD, Domínguez Cherit JG, Henderson S, Ure R, Van Haren F, McArthur C, Williams T, Moreno R, Póvoa P, Paiva JA, Catorze N, Blanco J, Ruiz-Rodriguez JC, Alvarez F, Rello J, Rodriguez A, Lopez MJ, Perez C, Betbese A, Artigas A, Ibanez J, Ruiz-Santana S, Gomez JI, Rico J, Sanchez M, Esteban A, Gonzalez G, Cambronero J, Sirgo G, Claramonte R, Guzman T, Maggiorini M, Kleger GR, Malacrida R, van Leeuwen H, van Zanten A, Pickkers P, Schouten J, Mallick A, Quasim T, Zuleika M, Sarkar P, Pogson D, MacNaughton P, Rhodes A, Whitehouse T, Margarson M, Jonas M, Bewley J, Arawwawala D, McLellan S, Davidson A, Harris RS, Samuel J, Birkhahn R, Willms D, Ardolic B, Hahn B, Douglas I, Albert R, Charchaflieh J, Djurkovic S, Barney J, Striker D, Koura F, McNellis M, Chang S, Frendl G, Morrison C, Kelly M, Dishman K, Anzueto A, Hagg D, Barram M, Ettinger N, Fruci C, Bayasi G, Kumar A, Abel W, Tanios M, Wunderink R, Rains R, Young B, Bekemeyer W, Krell K, Lo T, Wright P, Wilson M, Rains R, Wright P.

Source

Ospedale S. Giovanni Battista-Molinette, Università di Torino, Turin, Italy.

Abstract

BACKGROUND:

There have been conflicting reports on the efficacy of recombinant human activated protein C, or drotrecogin alfa (activated) (DrotAA), for the treatment of patients with septic shock.

METHODS:

In this randomized, double-blind, placebo-controlled, multicenter trial, we assigned 1697 patients with infection, systemic inflammation, and shock who were receiving fluids and vasopressors above a threshold dose for 4 hours to receive either DrotAA (at a dose of 24 μg per kilogram of body weight per hour) or placebo for 96 hours. The primary outcome was death from any cause 28 days after randomization.

RESULTS:

At 28 days, 223 of 846 patients (26.4%) in the DrotAA group and 202 of 834 (24.2%) in the placebo group had died (relative risk in the DrotAA group, 1.09; 95% confidence interval [CI], 0.92 to 1.28; P=0.31). At 90 days, 287 of 842 patients (34.1%) in the DrotAA group and 269 of 822 (32.7%) in the placebo group had died (relative risk, 1.04; 95% CI, 0.90 to 1.19; P=0.56). Among patients with severe protein C deficiency at baseline, 98 of 342 (28.7%) in the DrotAA group had died at 28 days, as compared with 102 of 331 (30.8%) in the placebo group (risk ratio, 0.93; 95% CI, 0.74 to 1.17; P=0.54). Similarly, rates of death at 28 and 90 days were not significantly different in other predefined subgroups, including patients at increased risk for death. Serious bleeding during the treatment period occurred in 10 patients in the DrotAA group and 8 in the placebo group (P=0.81).

CONCLUSIONS:

DrotAA did not significantly reduce mortality at 28 or 90 days, as compared with placebo, in patients with septic shock. (Funded by Eli Lilly; PROWESS-SHOCK ClinicalTrials.gov number, NCT00604214.).

Free Article
PMID: 22616830 [PubMed - indexed for MEDLINE]
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2. N Engl J Med. 2012 May 31;366(22):2122-4. Epub 2012 May 22.

Septic shock--evaluating another failed treatment.

Wenzel RP, Edmond MB. Free Article
PMID: 22616829 [PubMed - indexed for MEDLINE]
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