Wednesday, 2 February 2011

dbSNP Batch Query Result

The result of your batch query is ready. Go to the link below to download your result.

ATTENTION: Please download your file within 48 hours or it will be deleted due to limited storage space on our server.
http://www.ncbi.nih.gov/SNP/ftpfile.cgi?FileID=110202095310

Wed Feb 2 10:50:00 EST 2011

dbSNP BATCH QUERY REPORT: CHROMOSOME RPT
============================================================
Total number of Submitted ID: 30000
============================================================
Total number of ID not in dbSNP: 0
RS number(s) not found in dbSNP
________________________________________________
________________________________________________
Total number of duplicated ID: 8
________________________________________________
367530
446788
2781431
2883442
3784083
4316677
4598829
28592053
________________________________________________
Total number of ID processed: 29992
============================================================
These rs have been merged (submitted_rs -> new_rs)
________________________________________________
2772148 400127
2806260 1843055
2854948 2069961
3177095 1127392
3177427 7975
3178152 1132339
3783298 2230505
3811188 1135641
3841323 16661
3861651 3056923
4140930 2230237
4362322 744153
4362326 2373036
4421898 1467571
4451885 2096447
4463989 1073363
4516124 731901
4534754 2356100
4545733 1124489
4553531 1124053
4556706 2383519
4606622 3985240
4905700 2983893
5009871 1118322
5742797 1051154
5742872 14752
6575191 1285830
6576240 2284183
28412499 2495170
28434351 4911630
28489297 5023325
28504677 1778057
28524521 10572066
28525272 11912515
28525469 2766697
28538741 1754633
28613760 396718
28648414 3031361
28655428 7494941
28656772 1242920
28659896 2526853
28702903 3058484
33909887 6145330
33934077 5014537
33953589 5808378
33954090 3069133
34000938 11850766
34007620 1779484
34012348 11268151
34039682 12894363
34063055 12437325
34070333 3784083
34097700 1997985
34102144 7149296
34114038 2138228
34117320 1286297
34123601 1042306
34143324 12894213
34151591 2750128
34157120 2753639
34164480 2319680
34169232 7148431
34182412 1026424
34248533 4548785
34254385 10143823
34258541 1241504
34263042 10151259
34292987 12888156
34300659 1951456
34302909 5003846
34353631 2026673
34375121 11848564
34380609 12100471
34383663 4995322
34401016 11848673
34405754 28592053
34423492 1305548
34428507 12588010
34434079 7153701
34481396 1254306
34485903 1262174
34505454 11849588
34506841 1243656
34538923 1543440
34547141 1760947
34586180 8020762
34613990 1318485
34619144 28418682
34627976 10872910
34650438 177877
34652439 2781431
34673366 1188685
34681176 10141721
34695440 11849609
34733107 34278887
34758515 1763730
34769505 1494176
34784559 8016282
34785513 177881
34815533 12893569
34827369 11623750
34855395 2002925
34860094 165937
34860648 2415555
34892364 11623327
34910688 34299453
34916369 1457981
34922529 10142798
34929614 3910752
34936955 2167148
34948062 9671836
34953668 12897211
34957058 10134145
34964475 3866763
35033307 12895703
35038245 8017776
35102732 7155672
35112300 11626937
35144640 11626507
35154359 3033283
35160032 762805
35170927 8003267
35181980 177875
35185123 4598829
35201592 446788
35202007 12587005
35228758 12880592
35240846 11624752
35278099 1952215
35296369 12590755
35306239 160232
35327463 2319681
35329291 4271522
35354658 927540
35400904 10143042
35419847 431081
35432633 6572536
35450323 11851343
35453040 34846592
35455314 753216
35460142 11847596
35515457 11625145
35519699 1953189
35527829 4316677
35534947 1541607
35546764 2383313
35573464 1115185
35588410 35402170
35602122 1155788
35639811 2006063
35669264 177879
35687358 10438247
35690327 12892334
35703095 2162493
35768293 997619
35810732 1545420
35814647 1188576
35825726 4898729
35828284 11622824
35835373 10138047
35842271 11627615
35854229 1114959
35855575 11624600
35856777 5003847
35868150 10548512
35875857 8008881
35879486 12880629
35881074 2225672
35882403 367530
35890980 2584595
35902399 8018695
35936189 4905698
35941583 177878
35945649 2883442
35946353 927539
35960990 2273646
35962530 2092686
35983328 176950
36037395 1092017
36045361 10139907
36046512 10592547
36060922 1959435
36066691 36028472
36077621 1952802
36084532 374173
36084956 1760877
36114058 2222920
============================================================



####################### ASN AND XML SCHEMA UPDATE ########################
The ASN and XML schema for dbSNP Build 129 have major changes and updates.
The updated schema files are available at:
ASN ftp://ftp.ncbi.nih.gov/snp/specs/docsum_3.0.asn
XML ftp://ftp.ncbi.nih.gov/snp/specs/docsum_3.0.xsd
GenoExchange ftp://ftp.ncbi.nih.gov/snp/specs/genoex_1_4.xsd
##########################################################################

The result was gzip compressed and must be uncompressed for viewing. Uncompression utilities for most computers can be found at http://www.gzip.org/.

All dbSNP query results are plain text format. XML report data can be viewed in Windows environment using Internet Explorer with the following two steps:

1. Save the attachment to a local folder and extract with an uncompression utility. Make sure the extracted file has the extension ".xml"
2. Save the following XML xsd file to the same local folder. Make sure it has the original filename and extension.

RS DOCSUM XML: ftp://ftp.ncbi.nih.gov/snp/specs/docsum_3.0.xsd
GENOTYPE XML: ftp://ftp.ncbi.nih.gov/snp/specs/genoex_1_4.xsd

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