Pubmed output: What's new for 'JKB

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Sender's message: Sepsis or genomics or altitude: JKB_daily1

Sent on Friday, 2014 January 10
Search: (sepsis[MeSH Terms] OR septic shock[MeSH Terms] OR altitude[MeSH Terms] OR genomics[MeSH Terms] OR genetics[MeSH Terms] OR retrotransposons[MeSH Terms] OR macrophage[MeSH Terms]) AND ("2009/8/8"[Publication Date] : "3000"[Publication Date]) AND (("Science"[Journal] OR "Nature"[Journal] OR "The New England journal of medicine"[Journal] OR "Lancet"[Journal] OR "Nature genetics"[Journal] OR "Nature medicine"[Journal]) OR (Hume DA[Author] OR Baillie JK[Author] OR Faulkner, Geoffrey J[Author]))

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PubMed Results

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1.	Science. 2013 Dec 20;342(6165):1241089. doi: 10.1126/science.1241089. The Amborella genome and the evolution of flowering plants. Amborella Genome Project. Collaborators: Albert VA, Barbazuk WB, dePamphilis CW, Der JP, Leebens-Mack J, Ma H, Palmer JD, Rounsley S, Sankoff D, Schuster SC, Soltis DE, Soltis PS, Wessler SR, Wing RA, Albert VA, Ammiraju JS, Barbazuk WB, Chamala S, Chanderbali AS, dePamphilis CW, Der JP, Determann R, Leebens-Mack J, Ma H, Ralph P, Rounsley S, Schuster SC, Soltis DE, Soltis PS, Talag J, Tomsho L, Walts B, Wanke S, Wing RA, Albert VA, Barbazuk WB, Chamala S, Chanderbali AS, Chang TH, Determann R, Lan T, Soltis DE, Soltis PS, Arikit S, Axtell MJ, Ayyampalayam S, Barbazuk WB, Burnette JM 3rd, Chamala S, De Paoli E, dePamphilis CW, Der JP, Estill JC, Farrell NP, Harkess A, Jiao Y, Leebens-Mack J, Liu K, Mei W, Meyers BC, Shahid S, Wafula E, Walts B, Wessler SR, Zhai J, Zhang X, Albert VA, Carretero-Paulet L, dePamphilis CW, Der JP, Jiao Y, Leebens-Mack J, Lyons E, Sankoff D, Tang H, Wafula E, Zheng C, Albert VA, Altman NS, Barbazuk WB, Carretero-Paulet L, dePamphilis CW, Der JP, Estill JC, Jiao Y, Leebens-Mack J, Liu K, Mei W, Wafula E, Altman NS, Arikit S, Axtell MJ, Chamala S, Chanderbali AS, Chen F, Chen JQ, Chiang V, De Paoli E, dePamphilis CW, Der JP, Determann R, Fogliani B, Guo C, Harholt J, Harkess A, Job C, Job D, Kim S, Kong H, Leebens-Mack J, Li G, Li L, Liu J, Ma H, Meyers BC, Park J, Qi X, Rajjou L, Burtet-Sarramegna V, Sederoff R, Shahid S, Soltis DE, Soltis PS, Sun YH, Ulvskov P, Villegente M, Xue JY, Yeh TF, Yu X, Zhai J, Acosta JJ, Albert VA, Barbazuk WB, Bruenn RA, Chamala S, de Kochko A, dePamphilis CW, Der JP, Herrera-Estrella LR, Ibarra-Laclette E, Kirst M, Leebens-Mack J , Pissis SP, Poncet V, Schuster SC, Soltis DE, Soltis PS, Tomsho L. Comment in Genomics. Genomic clues to the ancestral flowering plant. [Science. 2013] Genomics. Genomic clues to the ancestral flowering plant.Adams K. Science. 2013 Dec 20; 342(6165):1456-7. Abstract Amborella trichopoda is strongly supported as the single living species of the sister lineage to all other extant flowering plants, providing a unique reference for inferring the genome content and structure of the most recent common ancestor (MRCA) of living angiosperms. Sequencing the Amborella genome, we identified an ancient genome duplication predating angiosperm diversification, without evidence of subsequent, lineage-specific genome duplications. Comparisons between Amborella and other angiosperms facilitated reconstruction of the ancestral angiosperm gene content and gene order in the MRCA of core eudicots. We identify new gene families, gene duplications, and floral protein-protein interactions that first appeared in the ancestral angiosperm. Transposable elements in Amborella are ancient and highly divergent, with no recent transposon radiations. Population genomic analysis across Amborella's native range in New Caledonia reveals a recent genetic bottleneck and geographic structure with conservation implications.
	PMID: 24357323 [PubMed - indexed for MEDLINE]
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2.	Nat Genet. 2013 Nov;45(11):1263. doi: 10.1038/ng.2825. Taking pan-cancer analysis global. [No authors listed] Abstract Although federated cooperation is politically desirable, uniform data quality and standards are essential and should not be reinvented from scratch. The International Cancer Genome Consortium (ICGC) will do well to start with the data standards of The Cancer Genome Atlas (TCGA) and the Pediatric Cancer Genome Consortium if it is to succeed in genomic analysis across cancer types.
	PMID: 24165723 [PubMed - indexed for MEDLINE]
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